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variant-calling
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99 Commits
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42 Commits (19a6548af2551f133655a381d6bdfe0627cd6282)

Author SHA1 Message Date
  YaqingLiu 19a6548af2 Fixbug: add pindel Boolean 3 years ago
  YaqingLiu 29053d0d19 Alter: replaceRG output 3 years ago
  YaqingLiu 7e4d99c1a7 Add: replaceRG 3 years ago
  YaqingLiu 6899365543 Fixbug: defaults 3 years ago
  YaqingLiu dbce0e5ce4 Alter: tumor-only 3 years ago
  YaqingLiu 831fa1b007 Alter: varscan_vep input name 3 years ago
  YaqingLiu 9e1ac3e469 Alter: BQSR 3 years ago
  YaqingLiu 33b1c80f3e test bam input 3 years ago
  YaqingLiu cb2cc7173e test add bam 3 years ago
  YaqingLiu 607454ab2f Update: add VEP 4 years ago
  YaqingLiu dbd1da94c2 Update: add PASS filter option 4 years ago
  YaqingLiu d925a41571 Update: ANNOVAR 4 years ago
  YaqingLiu 440fc0d224 Add annovar parameter 4 years ago
  YaqingLiu ef82cc2a54 Fixbug: output of annovar 4 years ago
  YaqingLiu eab87988a1 Alter: Varscan2 input is deduped BAM 4 years ago
  YaqingLiu e8f07a8c53 Alter: TNseq input is deduped BAM 4 years ago
  YaqingLiu d1faa18e02 Alter: TNseq Input 4 years ago
  YaqingLiu cb6332a576 Update: varscan somatic annovar 4 years ago
  YaqingLiu a06abfc5cf Update: varscan 4 years ago
  YaqingLiu 4ce53ad6c6 Fix bug: TNscope.wdl 4 years ago
  YaqingLiu 59b2e9cb84 Fix bug: Realigner's inputs 4 years ago
  YaqingLiu ed468bfd8e Fix bug: TNseq.wdl 4 years ago
  YaqingLiu a6057601d2 Fix bug: BQSR.wdl 4 years ago
  YaqingLiu ab4b741af9 Fix bug: germline 4 years ago
  YaqingLiu 784f19e2c9 Fix bug: remove vcf2maf 4 years ago
  YaqingLiu 02f79915c3 Fix bug: remove vcf2maf 4 years ago
  YaqingLiu 193d7a3bf4 Update: inputs 4 years ago
  YaqingLiu 979513f14c Update: inputs 4 years ago
  YaqingLiu 1dd6c6016d Update: inputs 4 years ago
  YaqingLiu 340692e44a Update: inputs 4 years ago
  YaqingLiu eb14b9b267 Update: inputs 4 years ago
  YaqingLiu d73e139d63 Update: inputs 4 years ago
  YaqingLiu 51f177520c Update: README.md 4 years ago
  YaqingLiu 24df48e237 Update: TNseq.wdl 4 years ago
  YaqingLiu 0c11f3af3f Update: TNscope.wdl 4 years ago
  YaqingLiu 91f18eb183 Remove corealigner and vcf2maf 4 years ago
  YaqingLiu 5189a041e6 Update: README.md 4 years ago
  YaqingLiu bc00d0efe5 Update: README.md 4 years ago
  YaqingLiu 031f11adde Fix Bug: input 4 years ago
  YaqingLiu 73ec3f4522 alter workflow parameters 4 years ago
  YaqingLiu 78ecea16ce alter workflow parameters 4 years ago
  YaqingLiu b9b58e0480 first commit 4 years ago