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@@ -3,23 +3,21 @@ This APP developed for germline and somatic short variant discovery (SNVs + Inde |
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***Supported callers*** |
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**All callers are not activated by default**, which means the default setting is `false`. |
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All callers are **not activated by default**, which means the default setting is `false`. |
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You need to manually set the caller to `true` in the submitted sample.csv. |
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The fields corresponding to these callers include `haplotyper`, `tnseq`, `tnscope`, `varscan`. |
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**Germline** |
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* Haplotyper |
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If you only want to call germline variants, please set `haplotyper` to true. |
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**Somatic** |
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* TNseq (TNhaplotyper2) |
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* TNscope |
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* VarScan |
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* TNhaplotyper (This caller is only available in `v0.1.0` as it is too outdated) |
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Variant caller can be selected by setting `ture/false` in the submitted sample.csv. |
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***Accepted data*** |
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* TN matched WES for somatic variant calling |
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* TN matched WGS for somatic variant calling |