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Update: README.md

tags/v0.1.2
YaqingLiu 4 년 전
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@@ -3,23 +3,21 @@ This APP developed for germline and somatic short variant discovery (SNVs + Inde

***Supported callers***

**All callers are not activated by default**, which means the default setting is `false`.
All callers are **not activated by default**, which means the default setting is `false`.

You need to manually set the caller to `true` in the submitted sample.csv.

The fields corresponding to these callers include `haplotyper`, `tnseq`, `tnscope`, `varscan`.

**Germline**
* Haplotyper

If you only want to call germline variants, please set `haplotyper` to true.

**Somatic**
* TNseq (TNhaplotyper2)
* TNscope
* VarScan
* TNhaplotyper (This caller is only available in `v0.1.0` as it is too outdated)

Variant caller can be selected by setting `ture/false` in the submitted sample.csv.

***Accepted data***
* TN matched WES for somatic variant calling
* TN matched WGS for somatic variant calling

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