1 changed files with 2 additions and 2 deletions
+ 2
- 2
workflow.wdl
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| @@ -497,8 +497,8 @@ workflow {{ project_name }} { | |||
| call Pindel.Pindel as Pindel_fb { | |||
| input: | |||
| sample_id=sample_id + '.N', | |||
| bam=normal_BQSR_fb.recaled_bam, | |||
| bam_index=normal_BQSR_fb.recaled_bam_index, | |||
| bam=normal_replaceRG.deduped_bam, | |||
| bam_index=normal_replaceRG.deduped_bam_index, | |||
| fasta=fasta, | |||
| ref_dir=ref_dir, | |||
| docker=pindel_docker, | |||
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