@@ -497,8 +497,8 @@ workflow {{ project_name }} { | |||
call Pindel.Pindel as Pindel_fb { | |||
input: | |||
sample_id=sample_id + '.N', | |||
bam=normal_BQSR_fb.recaled_bam, | |||
bam_index=normal_BQSR_fb.recaled_bam_index, | |||
bam=normal_replaceRG.deduped_bam, | |||
bam_index=normal_replaceRG.deduped_bam_index, | |||
fasta=fasta, | |||
ref_dir=ref_dir, | |||
docker=pindel_docker, |