1 changed files with 2 additions and 2 deletions
+ 2
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workflow.wdl
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| call Pindel.Pindel as Pindel_fb { | call Pindel.Pindel as Pindel_fb { | ||||
| input: | input: | ||||
| sample_id=sample_id + '.N', | sample_id=sample_id + '.N', | ||||
| bam=normal_BQSR_fb.recaled_bam, | |||||
| bam_index=normal_BQSR_fb.recaled_bam_index, | |||||
| bam=normal_replaceRG.deduped_bam, | |||||
| bam_index=normal_replaceRG.deduped_bam_index, | |||||
| fasta=fasta, | fasta=fasta, | ||||
| ref_dir=ref_dir, | ref_dir=ref_dir, | ||||
| docker=pindel_docker, | docker=pindel_docker, |
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