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LUYAO REN 5 年之前
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共有 1 個文件被更改,包括 4 次插入4 次删除
  1. +4
    -4
      tasks/mergeSentieon.wdl

+ 4
- 4
tasks/mergeSentieon.wdl 查看文件

@@ -18,10 +18,10 @@ task mergeSentieon {
command <<<
set -o pipefail
set -e
cat ${aln_metrics_header} | sed -n '1,1p' | cat - ${sep=" " aln_metrics_data} > aln_metrics.txt
cat ${dedup_metrics_header} | sed -n '1,1p' | cat - ${sep=" " dedup_metrics_data} > dedup_metrics.txt
cat ${is_metrics_header} | sed -n '1,1p' | cat - ${sep=" " is_metrics_data} > is_metrics.txt
cat ${deduped_coverage_header} | sed -n '1,1p' | cat - ${sep=" " deduped_coverage_data} > deduped_coverage.txt
cat ${sep=" " aln_metrics_header} | sed -n '1,1p' | cat - ${sep=" " aln_metrics_data} > aln_metrics.txt
cat ${sep=" " dedup_metrics_header} | sed -n '1,1p' | cat - ${sep=" " dedup_metrics_data} > dedup_metrics.txt
cat ${sep=" " is_metrics_header} | sed -n '1,1p' | cat - ${sep=" " is_metrics_data} > is_metrics.txt
cat ${sep=" " deduped_coverage_header} | sed -n '1,1p' | cat - ${sep=" " deduped_coverage_data} > deduped_coverage.txt
>>>

runtime {

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