LUYAO REN
5 years ago
1 changed files with 4 additions and 4 deletions
+ 4
- 4
tasks/mergeSentieon.wdl
View File
| @@ -18,10 +18,10 @@ task mergeSentieon { | |||
| command <<< | |||
| set -o pipefail | |||
| set -e | |||
| cat ${aln_metrics_header} | sed -n '1,1p' | cat - ${sep=" " aln_metrics_data} > aln_metrics.txt | |||
| cat ${dedup_metrics_header} | sed -n '1,1p' | cat - ${sep=" " dedup_metrics_data} > dedup_metrics.txt | |||
| cat ${is_metrics_header} | sed -n '1,1p' | cat - ${sep=" " is_metrics_data} > is_metrics.txt | |||
| cat ${deduped_coverage_header} | sed -n '1,1p' | cat - ${sep=" " deduped_coverage_data} > deduped_coverage.txt | |||
| cat ${sep=" " aln_metrics_header} | sed -n '1,1p' | cat - ${sep=" " aln_metrics_data} > aln_metrics.txt | |||
| cat ${sep=" " dedup_metrics_header} | sed -n '1,1p' | cat - ${sep=" " dedup_metrics_data} > dedup_metrics.txt | |||
| cat ${sep=" " is_metrics_header} | sed -n '1,1p' | cat - ${sep=" " is_metrics_data} > is_metrics.txt | |||
| cat ${sep=" " deduped_coverage_header} | sed -n '1,1p' | cat - ${sep=" " deduped_coverage_data} > deduped_coverage.txt | |||
| >>> | |||
| runtime { | |||
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