LUYAO REN
5 年之前
共有 1 個檔案被更改，包括 1 行新增 和 1 行删除
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tasks/sister.wdl
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| export LD_LIBRARY_PATH=/opt/htslib-1.9 | export LD_LIBRARY_PATH=/opt/htslib-1.9 | ||||
| mkdir sister | mkdir sister | ||||
| vbt varcomp -called ${LCL5_vcf} -base ${LCL6_vcf} -ref ${ref_dir}/${fasta} -outDir sister -filter none | |||||
| /opt/VBT-TrioAnalysis/vbt varcomp -called ${LCL5_vcf} -base ${LCL6_vcf} -ref ${ref_dir}/${fasta} -outDir sister -filter none | |||||
| mv sister/TPBase.vcf ${family_name}.sister.consistent.vcf | mv sister/TPBase.vcf ${family_name}.sister.consistent.vcf | ||||
| mv sister/FP.vcf ${family_name}.LCL5.uniq.vcf | mv sister/FP.vcf ${family_name}.LCL5.uniq.vcf |
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