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sister and family seprate

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LUYAO REN 5 年前
父节点
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559b7494a2
共有 1 个文件被更改,包括 1 次插入1 次删除
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      tasks/sister.wdl

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tasks/sister.wdl 查看文件

@@ -12,7 +12,7 @@ task sister {
export LD_LIBRARY_PATH=/opt/htslib-1.9

mkdir sister
vbt varcomp -called ${LCL5_vcf} -base ${LCL6_vcf} -ref ${ref_dir}/${fasta} -outDir sister -filter none
/opt/VBT-TrioAnalysis/vbt varcomp -called ${LCL5_vcf} -base ${LCL6_vcf} -ref ${ref_dir}/${fasta} -outDir sister -filter none

mv sister/TPBase.vcf ${family_name}.sister.consistent.vcf
mv sister/FP.vcf ${family_name}.LCL5.uniq.vcf

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