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add jaccard index

master
LUYAO REN 5 years ago
parent
commit
74696f3fb4
2 changed files with 2 additions and 2 deletions
  1. +1
    -1
      tasks/mergeNum.wdl
  2. +1
    -1
      workflow.wdl

+ 1
- 1
tasks/mergeNum.wdl View File

@@ -7,7 +7,7 @@ task mergeNum {
command <<<
set -o pipefail
set -e
for i in ${seq=" " vcfnumber}
for i in ${sep=" " vcfnumber}
do
cat $i | cut -d':' -f2 | tr '\n' '\t' | sed s'/\t$/\n/g' >> vcfstats
done

+ 1
- 1
workflow.wdl View File

@@ -22,7 +22,7 @@ workflow {{ project_name }} {
String fasta
File sdf

scatter (sample in inputSamples){
scatter (sample in inputSamples) {
call fastqc.fastqc as fastqc {
input:
read1=sample[0],

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