LUYAO REN
5 years ago
2 changed files with 2 additions and 2 deletions
+ 1
- 1
tasks/mergeNum.wdl
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| command <<< | command <<< | ||||
| set -o pipefail | set -o pipefail | ||||
| set -e | set -e | ||||
| for i in ${seq=" " vcfnumber} | |||||
| for i in ${sep=" " vcfnumber} | |||||
| do | do | ||||
| cat $i | cut -d':' -f2 | tr '\n' '\t' | sed s'/\t$/\n/g' >> vcfstats | cat $i | cut -d':' -f2 | tr '\n' '\t' | sed s'/\t$/\n/g' >> vcfstats | ||||
| done | done |
+ 1
- 1
workflow.wdl
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| String fasta | String fasta | ||||
| File sdf | File sdf | ||||
| scatter (sample in inputSamples){ | |||||
| scatter (sample in inputSamples) { | |||||
| call fastqc.fastqc as fastqc { | call fastqc.fastqc as fastqc { | ||||
| input: | input: | ||||
| read1=sample[0], | read1=sample[0], |
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