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fix bug

Qualimap_bamqc_wes
YaqingLiu 5 年之前
父節點
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d1c50a6da4
共有 1 個檔案被更改,包括 2 行新增2 行删除
  1. +2
    -2
      tasks/qualimapBAMqc.wdl

+ 2
- 2
tasks/qualimapBAMqc.wdl 查看文件

@@ -12,8 +12,8 @@ task qualimapBAMqc {
set -e
nt=$(nproc)
awk 'BEGIN{OFS="\t"}{sub("\r","",$3);print $1,$2,$3,"",0,"."}' ${regions} > new.bed
/opt/qualimap/qualimap bamqc -bam ${bam} -gff new.bed -outformat PDF:HTML -nt $nt -outdir ${bamname} --java-mem-size=32G
tar -zcvf ${bamname}_qualimap.zip ${bamname}
/opt/qualimap/qualimap bamqc -bam ${bam} -gff new.bed -outformat PDF:HTML -nt $nt -outdir ${bamname}_bamqc --java-mem-size=32G
tar -zcvf ${bamname}_bamqc_qualimap.zip ${bamname}_bamqc
>>>

runtime {

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