@@ -31,9 +31,11 @@ choppy install renluyao/DELLY_somatic | |||
2. DELLY检测突变 | |||
delly call -g <fastq_file> -o <output_bcf> -x human.hg38.excl.tsv <tumor_bam> <normal_bam> | |||
delly filter -f somatic -o <output_filtered_bcf> -s samples.tsv <output_bcf> | |||
```bash | |||
delly call -g <fastq_file> -o <output_bcf> -x human.hg38.excl.tsv <tumor_bam> <normal_bam> | |||
delly filter -f somatic -o <output_filtered_bcf> -s samples.tsv <output_bcf> | |||
``` | |||
其中samples.tsv按照如下准备,其中的tumor_name和normal_name要与bam文件中一致 | |||
```bash |