@@ -11,7 +11,7 @@ task samtools { | |||
set -o pipefail | |||
set -e | |||
/opt/conda/bin/samtools view -bS ${sam} > ${bam} | |||
/opt/conda/bin/samtools sort -m 500000000 ${bam} -o ${sorted_bam} | |||
/opt/conda/bin/samtools sort -m 1000000000 ${bam} -o ${sorted_bam} | |||
/opt/conda/bin/samtools index ${sorted_bam} | |||
>>> | |||