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更新 'tasks/rmats.wdl'

tags/v4.1.1
chenqingwang 4 years ago
parent
commit
bbc3934184
1 changed files with 2 additions and 1 deletions
  1. +2
    -1
      tasks/rmats.wdl

+ 2
- 1
tasks/rmats.wdl View File

@@ -1,6 +1,6 @@
task rmats {
String sample_id
File b1_txt_file
File b1_txt_file ## 阿里云不能直接读取txt内容,要建立阿里云和服务器的联系(read_csv)
Array[Array[File]] b1_txt = read_csv(b1_txt_file)
File b2_txt_file
Array[Array[File]] b2_txt = read_csv(b2_txt_file)
@@ -19,6 +19,7 @@ task rmats {

mkdir -p ${sample_id}/output
mkdir -p ${sample_id}/tmp_output
### 命令行无需修改
python /usr/local/bin/rmats.py --b1 ${b1_txt} \
--b2 ${b2_txt} \
--gtf ${reference_gtf_file} \

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