YaqingLiu
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variant-calling
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62 Commits (0b9bcc926f3af4c6685dc1ea8dcc7ce7841d536e)

Author SHA1 Message Date
  YaqingLiu 0b9bcc926f Update: VEP and ANNOVAR 3 years ago
  YaqingLiu c59e589713 Update: java Xmx32g 3 years ago
  YaqingLiu df1c66f195 Update: remove only_pass 3 years ago
  YaqingLiu e8269dd25f Update: annovar 3 years ago
  YaqingLiu d7acaa8040 Update: replaceRG 3 years ago
  YaqingLiu 1819c0a4f6 Update: threads in Pindel 3 years ago
  YaqingLiu af26391dd8 Fixbug: insert size in Pindel 3 years ago
  YaqingLiu 3accc366b6 update workflow 3 years ago
  YaqingLiu d064f8f055 Update: workflow 3 years ago
  YaqingLiu 4975096286 Alter varscan Xmx16g 3 years ago
  YaqingLiu 13bc0462c9 Update: samtools dir 3 years ago
  YaqingLiu f515625972 Fixbug: samtools index 3 years ago
  YaqingLiu 5e46d8aee0 Fixbug: task's name 3 years ago
  YaqingLiu cd5f5ba56b Fixbug: pindel task name 3 years ago
  YaqingLiu a36b68f093 Fixbug: $ in pindel 3 years ago
  YaqingLiu d2988bab5d Fixbug: cluster: cluster_config 3 years ago
  YaqingLiu 29053d0d19 Alter: replaceRG output 3 years ago
  YaqingLiu 7e4d99c1a7 Add: replaceRG 3 years ago
  YaqingLiu fe311d4483 Fixbug: remove 3 years ago
  YaqingLiu 212b5c40df Fixbug: TNseq output 3 years ago
  YaqingLiu fe6512cce0 Fixbug: TNseq output 3 years ago
  YaqingLiu 71cb524380 Fixbug: TNseq output 3 years ago
  YaqingLiu b124b6d8d0 Fixbug: TNseq 3 years ago
  YaqingLiu dbce0e5ce4 Alter: tumor-only 3 years ago
  YaqingLiu 9a3ce1ee23 Alter: VEP task name 3 years ago
  YaqingLiu 9e1ac3e469 Alter: BQSR 3 years ago
  YaqingLiu 7868563c2a Fixbug: ANNOVAR 3 years ago
  YaqingLiu 607454ab2f Update: add VEP 4 years ago
  YaqingLiu dbd1da94c2 Update: add PASS filter option 4 years ago
  YaqingLiu 3a2e5030af Update ANNOVAR.wdl filename 4 years ago
  YaqingLiu d925a41571 Update: ANNOVAR 4 years ago
  YaqingLiu fef526105b Add TNseq output 4 years ago
  YaqingLiu 440fc0d224 Add annovar parameter 4 years ago
  YaqingLiu a2064698dc Fixbug: output of annovar 4 years ago
  YaqingLiu 6d4d6abe80 Update: simplify BQSR 4 years ago
  YaqingLiu e8f07a8c53 Alter: TNseq input is deduped BAM 4 years ago
  YaqingLiu d1faa18e02 Alter: TNseq Input 4 years ago
  YaqingLiu 03fb6ee728 Update: defaults 4 years ago
  YaqingLiu 7e612b6ddd Fix bug: merge Varscan's results 4 years ago
  YaqingLiu cb6332a576 Update: varscan somatic annovar 4 years ago
  YaqingLiu a06abfc5cf Update: varscan 4 years ago
  YaqingLiu 96a3c5dc5d Update: annovar.wdl, remove ensGene and knownGene 4 years ago
  YaqingLiu 4ce53ad6c6 Fix bug: TNscope.wdl 4 years ago
  YaqingLiu af9561b1e0 Fix bug: BQSR.wdl 4 years ago
  YaqingLiu ed468bfd8e Fix bug: TNseq.wdl 4 years ago
  YaqingLiu a6057601d2 Fix bug: BQSR.wdl 4 years ago
  YaqingLiu fe662a3686 Fix bug: TNseq.wdl 4 years ago
  YaqingLiu 09159a19f9 Update: README.md 4 years ago
  YaqingLiu 693a6bc34b Fix bug: Haplotyper 4 years ago
  YaqingLiu eb14b9b267 Update: inputs 4 years ago