Pārlūkot izejas kodu

remove output_id

master
YaqingLiu pirms 3 gadiem
vecāks
revīzija
212f2d80ff
3 mainītis faili ar 2 papildinājumiem un 4 dzēšanām
  1. +0
    -1
      inputs
  2. +1
    -1
      tasks/fastq_ncm.wdl
  3. +1
    -2
      workflow.wdl

+ 0
- 1
inputs Parādīt failu

"{{ project_name }}.sample_id": "{{ sample_id }}", "{{ project_name }}.sample_id": "{{ sample_id }}",
"{{ project_name }}.fastq1": "{{ fastq1 }}", "{{ project_name }}.fastq1": "{{ fastq1 }}",
"{{ project_name }}.fastq2": "{{ fastq2 }}", "{{ project_name }}.fastq2": "{{ fastq2 }}",
"{{ project_name }}.output_id": "{{ output_id }}",
"{{ project_name }}.subsampling_rate": "{{ subsampling_rate }}", "{{ project_name }}.subsampling_rate": "{{ subsampling_rate }}",
"{{ project_name }}.docker": "{{ docker }}", "{{ project_name }}.docker": "{{ docker }}",
"{{ project_name }}.disk_size": "{{ disk_size }}", "{{ project_name }}.disk_size": "{{ disk_size }}",

+ 1
- 1
tasks/fastq_ncm.wdl Parādīt failu

task fastq_ncm { task fastq_ncm {
String out_id
File fq1 File fq1
File fq2 File fq2
String out_id
String subsampling_rate String subsampling_rate
String docker String docker
String cluster_config String cluster_config

+ 1
- 2
workflow.wdl Parādīt failu

String sample_id String sample_id
File fastq1 File fastq1
File fastq2 File fastq2
String output_id
String subsampling_rate String subsampling_rate
String docker String docker
String cluster_config String cluster_config
call fastq_ncm.fastq_ncm as fastq_ncm { call fastq_ncm.fastq_ncm as fastq_ncm {
input: input:
out_id=sample_id,
fq1=fastq1, fq1=fastq1,
fq2=fastq2, fq2=fastq2,
out_id=output_id,
subsampling_rate=subsampling_rate, subsampling_rate=subsampling_rate,
docker=docker, docker=docker,
disk_size=disk_size, disk_size=disk_size,

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