"{{ project_name }}.sample_id": "{{ sample_id }}", | "{{ project_name }}.sample_id": "{{ sample_id }}", | ||||
"{{ project_name }}.fastq1": "{{ fastq1 }}", | "{{ project_name }}.fastq1": "{{ fastq1 }}", | ||||
"{{ project_name }}.fastq2": "{{ fastq2 }}", | "{{ project_name }}.fastq2": "{{ fastq2 }}", | ||||
"{{ project_name }}.output_id": "{{ output_id }}", | |||||
"{{ project_name }}.subsampling_rate": "{{ subsampling_rate }}", | "{{ project_name }}.subsampling_rate": "{{ subsampling_rate }}", | ||||
"{{ project_name }}.docker": "{{ docker }}", | "{{ project_name }}.docker": "{{ docker }}", | ||||
"{{ project_name }}.disk_size": "{{ disk_size }}", | "{{ project_name }}.disk_size": "{{ disk_size }}", |
task fastq_ncm { | task fastq_ncm { | ||||
String out_id | |||||
File fq1 | File fq1 | ||||
File fq2 | File fq2 | ||||
String out_id | |||||
String subsampling_rate | String subsampling_rate | ||||
String docker | String docker | ||||
String cluster_config | String cluster_config |
String sample_id | String sample_id | ||||
File fastq1 | File fastq1 | ||||
File fastq2 | File fastq2 | ||||
String output_id | |||||
String subsampling_rate | String subsampling_rate | ||||
String docker | String docker | ||||
String cluster_config | String cluster_config | ||||
call fastq_ncm.fastq_ncm as fastq_ncm { | call fastq_ncm.fastq_ncm as fastq_ncm { | ||||
input: | input: | ||||
out_id=sample_id, | |||||
fq1=fastq1, | fq1=fastq1, | ||||
fq2=fastq2, | fq2=fastq2, | ||||
out_id=output_id, | |||||
subsampling_rate=subsampling_rate, | subsampling_rate=subsampling_rate, | ||||
docker=docker, | docker=docker, | ||||
disk_size=disk_size, | disk_size=disk_size, |