Calculate the bed coverage of multiple BAM files before and after dedup
Nevar pievienot vairāk kā 25 tēmas Tēmai ir jāsākas ar burtu vai ciparu, tā var saturēt domu zīmes ('-') un var būt līdz 35 simboliem gara.
YaqingLiu 459dc16be2 add parameter: include dup pirms 4 gadiem
tasks add parameter: include dup pirms 4 gadiem
README.md revised-readme pirms 5 gadiem
input_bai.tsv revised-bedtools-task pirms 5 gadiem
input_bam.tsv revised-bedtools-task pirms 5 gadiem
inputs add parameter: include dup pirms 4 gadiem
workflow.wdl add parameter: include dup pirms 4 gadiem

README.md

Author: Jun Shang

Email: shangjunv@163.com

Last Updates: 20/03/2020

Requirements

  • choppy
  • Ali-Cloud
$ source activate choppy
$ choppy install junshang/bedtools
$ choppy apps

quick start

  • 将 input_bam.tsv 和 input_bai.tsv 放到阿里云,路径用户自己设定

input_bam.tsv 和 input_bai.tsv 格式参考上述示例文件

  • 准备 samples.csv 文件,如下:
$ choppy samples junshang/bedtools-latest > samples.csv
$ choppy batch junshang/bedtools-latest samples.csv -p Your_project_name