2 gewijzigde bestanden met toevoegingen van 0 en 3 verwijderingen
+ 0
- 1
tasks/bedtools.wdl
Bestand weergeven
| @@ -1,7 +1,6 @@ | |||
| task bedtools { | |||
| Array[File] bam | |||
| Array[File] bai | |||
| File bed_file | |||
| String docker | |||
+ 0
- 2
workflow.wdl
Bestand weergeven
| @@ -6,11 +6,9 @@ workflow {{ project_name }} { | |||
| File bed_file | |||
| Array[Array[File]] input_samples = read_tsv(input_samples_file) | |||
| Array[File] bam = input_samples[0] | |||
| Array[File] bai = input_samples[1] | |||
| call bedtools.bedtools as bedtools { | |||
| input: | |||
| bam=bam, | |||
| bai=bai, | |||
| bed_file=bed_file | |||
| } | |||
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