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fix bug

master
YaqingLiu 5 years ago
parent
commit
5cfd00e3eb
1 changed files with 7 additions and 6 deletions
  1. +7
    -6
      tasks/bamdst.wdl

+ 7
- 6
tasks/bamdst.wdl View File

@@ -12,13 +12,14 @@ task bamdst {
set -o pipefail
set -e
nt=$(nproc)
bamdst -p ${bed} -o ./ ${bam}
cp ./chromosomes.report ./${sample}_chromosomes.report
cp ./coverage.report ./${sample}_coverage.report
cp ./depth_distribution.plot ./${sample}_depth_distribution.plot
cp ./insertsize.plot ./${sample}_insertsize.plot
cp ./region.tsv.gz ./${sample}_region.tsv.gz
cp ./uncover.bed ./${sample}_uncover.bed
cp chromosomes.report ${sample}_chromosomes.report
cp coverage.report ${sample}_coverage.report
cp depth_distribution.plot ${sample}_depth_distribution.plot
cp insertsize.plot ${sample}_insertsize.plot
cp region.tsv.gz ${sample}_region.tsv.gz
cp uncover.bed ${sample}_uncover.bed
>>>

runtime {

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