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@@ -12,13 +12,14 @@ task bamdst { |
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set -o pipefail |
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set -e |
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nt=$(nproc) |
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bamdst -p ${bed} -o ./ ${bam} |
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cp ./chromosomes.report ./${sample}_chromosomes.report |
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cp ./coverage.report ./${sample}_coverage.report |
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cp ./depth_distribution.plot ./${sample}_depth_distribution.plot |
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cp ./insertsize.plot ./${sample}_insertsize.plot |
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cp ./region.tsv.gz ./${sample}_region.tsv.gz |
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cp ./uncover.bed ./${sample}_uncover.bed |
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cp chromosomes.report ${sample}_chromosomes.report |
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cp coverage.report ${sample}_coverage.report |
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cp depth_distribution.plot ${sample}_depth_distribution.plot |
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cp insertsize.plot ${sample}_insertsize.plot |
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cp region.tsv.gz ${sample}_region.tsv.gz |
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cp uncover.bed ${sample}_uncover.bed |
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>>> |
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runtime { |