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inputs
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| { | { | ||||
| "{{ project_name }}.bam": "{{ bam }}", | "{{ project_name }}.bam": "{{ bam }}", | ||||
| "{{ project_name }}.bam": "{{ bai }}", | |||||
| "{{ project_name }}.bed": "{{ bed }}", | "{{ project_name }}.bed": "{{ bed }}", | ||||
| "{{ project_name }}.sample": "{{ sample }}", | "{{ project_name }}.sample": "{{ sample }}", | ||||
| "{{ project_name }}.docker": "{{ docker }}", | "{{ project_name }}.docker": "{{ docker }}", |
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tasks/bamdst.wdl
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| task bamdst { | task bamdst { | ||||
| File bam | File bam | ||||
| File bai | |||||
| File bed | File bed | ||||
| String sample | String sample | ||||
| String docker | String docker |
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workflow.wdl
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| workflow {{ project_name }} { | workflow {{ project_name }} { | ||||
| File bam | File bam | ||||
| File bai | |||||
| File bed | File bed | ||||
| String sample | String sample | ||||
| String docker | String docker | ||||
| call bamdst.bamdst as bamdst { | call bamdst.bamdst as bamdst { | ||||
| input: | input: | ||||
| bam=bam, | bam=bam, | ||||
| bai=bai, | |||||
| bed=bed, | bed=bed, | ||||
| sample=sample, | sample=sample, | ||||
| docker=docker, | docker=docker, |
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