bamdst is a lightweight tool to stat the depth coverage of target regions of bam file(s).
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  1. import "./tasks/bamdst.wdl" as bamdst
  2. workflow {{ project_name }} {
  3. File bam
  4. File bai
  5. File bed
  6. String sample
  7. String docker
  8. String cluster_config
  9. String disk_size
  10. call bamdst.bamdst as bamdst {
  11. input:
  12. bam=bam,
  13. bai=bai,
  14. bed=bed,
  15. sample=sample,
  16. docker=docker,
  17. disk_size=disk_size,
  18. cluster_config=cluster_config
  19. }
  20. }