fix(MSIsensor): normal_bam

tasks/MSIsensor.wdl

@@ -20,7 +20,7 @@ task MSIsensor {
     # MSI
 		mkdir -p /cromwell_root/tmp/${sample}
     msisensor-pro scan -d ${ref_dir}/${fasta} -o reference.list
-    if [ ${normal_recaled_bam} ]; then
+    if [ ${normal_bam} ]; then
       msisensor-pro msi -d reference.list -n ${normal_bam} -t ${tumor_bam} -o /cromwell_root/tmp/${sample}
     else
       msisensor-pro pro -d ${baseline} -t ${tumor_bam} -o /cromwell_root/tmp/${sample}

workflow.wdl

@@ -331,7 +331,7 @@ workflow {{ project_name }} {
     cluster_config=cluster_config,
     disk_size=disk_size
   }
-
+  
   call CNVkit.CNVkit as CNVkit {
     input:
     sample=sample_id,