size=`awk -F'\t' 'BEGIN{SUM=0}{SUM+=$3-$2}END{print SUM}' merged.bed` | size=`awk -F'\t' 'BEGIN{SUM=0}{SUM+=$3-$2}END{print SUM}' merged.bed` | ||||
# analysis in python | # analysis in python | ||||
python ~/tmb.py ${snpindel_txt} ${size} ${sample} | |||||
python ~/tmb.py ${snpindel_txt} $size ${sample} | |||||
>>> | >>> | ||||
runtime { | runtime { |