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tasks/TMB.wdl
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| @@ -16,7 +16,7 @@ task TMB { | |||
| size=`awk -F'\t' 'BEGIN{SUM=0}{SUM+=$3-$2}END{print SUM}' merged.bed` | |||
| # analysis in python | |||
| python ~/tmb.py ${snpindel_txt} ${size} ${sample} | |||
| python ~/tmb.py ${snpindel_txt} $size ${sample} | |||
| >>> | |||
| runtime { | |||
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