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fix(input): missing bcftools

master
YaqingLiu 2 роки тому
джерело
коміт
004b824a67
3 змінених файлів з 5 додано та 2 видалено
  1. +2
    -1
      defaults
  2. +1
    -0
      inputs
  3. +2
    -1
      workflow.wdl

+ 2
- 1
defaults Переглянути файл

"germline_resource_tbi": "oss://genomics-platform-reference-data/gnomAD/af-only-gnomad.v3.1.1.vcf.gz.tbi", "germline_resource_tbi": "oss://genomics-platform-reference-data/gnomAD/af-only-gnomad.v3.1.1.vcf.gz.tbi",
"gc": "oss://ivd-product/reference/Sequenza/GRCh38.gc50Base.wig.gz", "gc": "oss://ivd-product/reference/Sequenza/GRCh38.gc50Base.wig.gz",
"sentieon_docker": "registry.cn-shanghai.aliyuncs.com/choppy-pipe/sentieon-genomics:v202112.05", "sentieon_docker": "registry.cn-shanghai.aliyuncs.com/choppy-pipe/sentieon-genomics:v202112.05",
"annovar_docker": "registry.cn-shanghai.aliyuncs.com/choppy-pipe/annovar:v20191024",
"manta_docker": "registry.cn-shanghai.aliyuncs.com/choppy-pipe/manta:1.6.0", "manta_docker": "registry.cn-shanghai.aliyuncs.com/choppy-pipe/manta:1.6.0",
"bcftools_docker": "registry.cn-shanghai.aliyuncs.com/choppy-pipe/bcftools:v1.9",
"annovar_docker": "registry.cn-shanghai.aliyuncs.com/choppy-pipe/annovar:v20191024",
"annotsv_docker": "registry.cn-shanghai.aliyuncs.com/choppy-pipe/annotsv:3.1.3", "annotsv_docker": "registry.cn-shanghai.aliyuncs.com/choppy-pipe/annotsv:3.1.3",
"cnvkit_docker": "registry.cn-shanghai.aliyuncs.com/choppy-pipe/cnvkit:0.9.8", "cnvkit_docker": "registry.cn-shanghai.aliyuncs.com/choppy-pipe/cnvkit:0.9.8",
"sequenza_docker": "registry.cn-shanghai.aliyuncs.com/choppy-pipe/sequenza:3.0.0", "sequenza_docker": "registry.cn-shanghai.aliyuncs.com/choppy-pipe/sequenza:3.0.0",

+ 1
- 0
inputs Переглянути файл

"{{ project_name }}.SENTIEON_LICENSE": "{{ SENTIEON_LICENSE }}", "{{ project_name }}.SENTIEON_LICENSE": "{{ SENTIEON_LICENSE }}",
"{{ project_name }}.sentieon_docker": "{{ sentieon_docker }}", "{{ project_name }}.sentieon_docker": "{{ sentieon_docker }}",
"{{ project_name }}.manta_docker": "{{ manta_docker }}", "{{ project_name }}.manta_docker": "{{ manta_docker }}",
"{{ project_name }}.bcftools_docker": "{{ bcftools_docker }}",
"{{ project_name }}.annovar_docker": "{{ annovar_docker }}", "{{ project_name }}.annovar_docker": "{{ annovar_docker }}",
"{{ project_name }}.annotsv_docker": "{{ annotsv_docker }}", "{{ project_name }}.annotsv_docker": "{{ annotsv_docker }}",
"{{ project_name }}.cnvkit_docker": "{{ cnvkit_docker }}", "{{ project_name }}.cnvkit_docker": "{{ cnvkit_docker }}",

+ 2
- 1
workflow.wdl Переглянути файл

String SENTIEON_LICENSE String SENTIEON_LICENSE
String sentieon_docker String sentieon_docker
String annovar_docker
String manta_docker String manta_docker
String bcftools_docker
String annovar_docker
String annotsv_docker String annotsv_docker
String cnvkit_docker String cnvkit_docker
String sequenza_docker String sequenza_docker

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