21 arquivos alterados com 8 adições e 8 exclusões
wes-somatic-hg38/.DS_Store → .DS_Store
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wes-somatic-hg38/LICENSE.md → LICENSE.md
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README.md
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| #### Usage | |||
| $ open-choppy-env | |||
| $ choppy install ... | |||
| #### inputSamplesFile | |||
| sample_id tumor_fastq_1 tumor_fastq_2 normal_fastq_1 normal_fastq_1 | |||
| inputSamplesFile is in the form of tsv, and should be put into Aliyun OSS. | |||
wes-somatic-hg38/defaults → defaults
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wes-somatic-hg38/inputs → inputs
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wes-somatic-hg38/tasks/BQSR.wdl → tasks/BQSR.wdl
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wes-somatic-hg38/tasks/Dedup.wdl → tasks/Dedup.wdl
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wes-somatic-hg38/tasks/Haplotyper.wdl → tasks/Haplotyper.wdl
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wes-somatic-hg38/tasks/Metrics.wdl → tasks/Metrics.wdl
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wes-somatic-hg38/tasks/PON.wdl → tasks/PON.wdl
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wes-somatic-hg38/tasks/Realigner.wdl → tasks/Realigner.wdl
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wes-somatic-hg38/tasks/TNscope.wdl → tasks/TNscope.wdl
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wes-somatic-hg38/tasks/TNseq.wdl → tasks/TNseq.wdl
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wes-somatic-hg38/tasks/annovar.wdl → tasks/annovar.wdl
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wes-somatic-hg38/tasks/bcftools.wdl → tasks/bcftools.wdl
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wes-somatic-hg38/tasks/corealigner.wdl → tasks/corealigner.wdl
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wes-somatic-hg38/tasks/deduped_Metrics.wdl → tasks/deduped_Metrics.wdl
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wes-somatic-hg38/tasks/mapping.wdl → tasks/mapping.wdl
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wes-somatic-hg38/tasks/vcf2maf.wdl → tasks/vcf2maf.wdl
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wes-somatic-hg38/README.md
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| @@ -1,8 +0,0 @@ | |||
| #### Usage | |||
| $ open-choppy-env | |||
| $ choppy install ... | |||
| #### inputSamplesFile | |||
| sample_id tumor_fastq_1 tumor_fastq_2 normal_fastq_1 normal_fastq_1 | |||
| inputSamplesFile is in the form of tsv, and should be put into Aliyun OSS. | |||
wes-somatic-hg38/workflow.wdl → workflow.wdl
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