@@ -1,4 +1,5 @@ | |||
{ | |||
"{{ project_name }}.sample": "{{ sample }}", | |||
"{{ project_name }}.fastq_1": "{{ fastq_1 }}", | |||
"{{ project_name }}.fastq_2": "{{ fastq_2 }}", | |||
"{{ project_name }}.normal_recaled_bam": "{{ normal_recaled_bam }}", |
@@ -13,13 +13,14 @@ import "./tasks/vcf2maf.wdl" as vcf2maf | |||
workflow {{ project_name }} { | |||
String sample | |||
File fastq_1 | |||
File fastq_2 | |||
File? normal_recaled_bam | |||
File? normal_recaled_bam_index | |||
String type | |||
String SENTIEON_INSTALL_DIR | |||
String SENTIEON_LICENSE | |||
String sentieon_docker | |||
@@ -178,7 +179,7 @@ workflow {{ project_name }} { | |||
cluster_config=cluster_config | |||
} | |||
} | |||
call TNseq.TNseq as TNseq { | |||
input: | |||
SENTIEON_INSTALL_DIR=SENTIEON_INSTALL_DIR, |