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fix bug

master
YaqingLiu 5 anos atrás
pai
commit
3c1c386fdc
2 arquivos alterados com 5 adições e 3 exclusões
  1. +1
    -0
      inputs
  2. +4
    -3
      workflow.wdl

+ 1
- 0
inputs Ver arquivo

{ {
"{{ project_name }}.sample": "{{ sample }}",
"{{ project_name }}.fastq_1": "{{ fastq_1 }}", "{{ project_name }}.fastq_1": "{{ fastq_1 }}",
"{{ project_name }}.fastq_2": "{{ fastq_2 }}", "{{ project_name }}.fastq_2": "{{ fastq_2 }}",
"{{ project_name }}.normal_recaled_bam": "{{ normal_recaled_bam }}", "{{ project_name }}.normal_recaled_bam": "{{ normal_recaled_bam }}",

+ 4
- 3
workflow.wdl Ver arquivo





workflow {{ project_name }} { workflow {{ project_name }} {

String sample
File fastq_1 File fastq_1
File fastq_2 File fastq_2
File? normal_recaled_bam File? normal_recaled_bam
File? normal_recaled_bam_index File? normal_recaled_bam_index
String type String type
String SENTIEON_INSTALL_DIR String SENTIEON_INSTALL_DIR
String SENTIEON_LICENSE String SENTIEON_LICENSE
String sentieon_docker String sentieon_docker
cluster_config=cluster_config cluster_config=cluster_config
} }
} }
call TNseq.TNseq as TNseq { call TNseq.TNseq as TNseq {
input: input:
SENTIEON_INSTALL_DIR=SENTIEON_INSTALL_DIR, SENTIEON_INSTALL_DIR=SENTIEON_INSTALL_DIR,

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