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workflow {{ project_name }} { |
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workflow {{ project_name }} { |
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String sample |
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File fastq_1 |
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File fastq_1 |
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File fastq_2 |
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File fastq_2 |
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File? normal_recaled_bam |
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File? normal_recaled_bam |
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File? normal_recaled_bam_index |
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File? normal_recaled_bam_index |
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String type |
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String type |
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String SENTIEON_INSTALL_DIR |
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String SENTIEON_INSTALL_DIR |
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String SENTIEON_LICENSE |
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String SENTIEON_LICENSE |
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String sentieon_docker |
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String sentieon_docker |
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cluster_config=cluster_config |
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cluster_config=cluster_config |
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} |
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} |
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} |
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} |
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call TNseq.TNseq as TNseq { |
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call TNseq.TNseq as TNseq { |
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input: |
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input: |
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SENTIEON_INSTALL_DIR=SENTIEON_INSTALL_DIR, |
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SENTIEON_INSTALL_DIR=SENTIEON_INSTALL_DIR, |