@@ -6,7 +6,7 @@ task processSomatic { | |||
File ref_dir | |||
String fasta | |||
String varscan_docker | |||
String docker | |||
String cluster_config | |||
String disk_size | |||
@@ -14,7 +14,7 @@ task processSomatic { | |||
java -Xmx12g -jar /opt/VarScan.v2.4.3.jar processSomatic ${varscan_snp} | |||
java -Xmx12g -jar /opt/VarScan.v2.4.3.jar processSomatic ${varscan_indel} | |||
>>> | |||
runtime { | |||
docker: docker | |||
cluster: cluster_config |