1 changed files with 2 additions and 2 deletions
+ 2
- 2
tasks/processSomatic.wdl
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| File ref_dir | File ref_dir | ||||
| String fasta | String fasta | ||||
| String varscan_docker | |||||
| String docker | |||||
| String cluster_config | String cluster_config | ||||
| String disk_size | String disk_size | ||||
| java -Xmx12g -jar /opt/VarScan.v2.4.3.jar processSomatic ${varscan_snp} | java -Xmx12g -jar /opt/VarScan.v2.4.3.jar processSomatic ${varscan_snp} | ||||
| java -Xmx12g -jar /opt/VarScan.v2.4.3.jar processSomatic ${varscan_indel} | java -Xmx12g -jar /opt/VarScan.v2.4.3.jar processSomatic ${varscan_indel} | ||||
| >>> | >>> | ||||
| runtime { | runtime { | ||||
| docker: docker | docker: docker | ||||
| cluster: cluster_config | cluster: cluster_config |
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