@@ -2,14 +2,14 @@ task vcf2maf { | |||
String sample | |||
File multianno_txt | |||
String maf = basename(multianno_txt,".hg38_multianno.txt") | |||
String maf_name = basename(multianno_txt,".hg38_multianno.txt") | |||
String docker | |||
String cluster_config | |||
String disk_size | |||
command <<< | |||
vcf2maf ${multianno_txt} ${maf}.maf | |||
vcf2maf ${multianno_txt} ${maf_name}.maf | |||
>>> | |||
runtime { | |||
@@ -20,6 +20,6 @@ task vcf2maf { | |||
} | |||
output { | |||
File maf = "${maf}.maf" | |||
File maf = "${maf_name}.maf" | |||
} | |||
} |