1 changed files with 4 additions and 4 deletions
+ 4
- 4
tasks/vcf2maf.wdl
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| String sample | String sample | ||||
| File multianno_txt | File multianno_txt | ||||
| String maf = basename(multianno_txt,".hg38_multianno.txt") | |||||
| String maf_name = basename(multianno_txt,".hg38_multianno.txt") | |||||
| String docker | String docker | ||||
| String cluster_config | String cluster_config | ||||
| String disk_size | String disk_size | ||||
| command <<< | command <<< | ||||
| vcf2maf ${multianno_txt} ${maf}.maf | |||||
| vcf2maf ${multianno_txt} ${maf_name}.maf | |||||
| >>> | >>> | ||||
| runtime { | runtime { | ||||
| } | } | ||||
| output { | output { | ||||
| File maf = "${maf}.maf" | |||||
| File maf = "${maf_name}.maf" | |||||
| } | } | ||||
| } | } |
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