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String sample |
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String sample |
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File multianno_txt |
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File multianno_txt |
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String maf = basename(multianno_txt,".hg38_multianno.txt") |
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String maf_name = basename(multianno_txt,".hg38_multianno.txt") |
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String docker |
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String docker |
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String cluster_config |
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String cluster_config |
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String disk_size |
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String disk_size |
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command <<< |
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command <<< |
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vcf2maf ${multianno_txt} ${maf}.maf |
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vcf2maf ${multianno_txt} ${maf_name}.maf |
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>>> |
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>>> |
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runtime { |
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runtime { |
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} |
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} |
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output { |
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output { |
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File maf = "${maf}.maf" |
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File maf = "${maf_name}.maf" |
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} |
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} |
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} |
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} |