2 changed files with 2 additions and 2 deletions
BIN
.DS_Store
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+ 2
- 2
tasks/vaf_ncm.wdl
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| @@ -8,13 +8,13 @@ task vaf_ncm { | |||
| command <<< | |||
| set -o pipefail | |||
| set -e | |||
| #nt=$(nproc) | |||
| nt=$(nproc) | |||
| export NCM_HOME=/opt/NGSCheckMate | |||
| mkdir -p /ncm/fastq_vaf/ | |||
| cp ${sep=" " vaf} /ncm/fastq_vaf/ | |||
| python /opt/NGSCheckMate/vaf_ncm.py -I /ncm/fastq_vaf/ -O '.' -f | |||
| python /opt/NGSCheckMate/vaf_ncm.py -I /ncm/fastq_vaf/ -O '.' -f -p $nt | |||
| >>> | |||
| runtime { | |||
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