LUYAO REN
6 年前
共有 1 个文件被更改，包括 2 次插入 和 4 次删除
+ 2
- 4
tasks/NGScheckMates.wdl
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| nt=$(nproc) | nt=$(nproc) | ||||
| export NCM_HOME=/opt/NGSCheckMate | export NCM_HOME=/opt/NGSCheckMate | ||||
| python /opt/NGSCheckMate/ncm_fastq.py -l ${input_file} -pt /opt/NGSCheckMate/SNP/SNP.pt -O '.' -p $nt -f -nz | python /opt/NGSCheckMate/ncm_fastq.py -l ${input_file} -pt /opt/NGSCheckMate/SNP/SNP.pt -O '.' -p $nt -f -nz | ||||
| pwd > wd.txt | |||||
| ls >> wd.txt | |||||
| ls /cromwell_inputs/ > wd.txt | |||||
| >>> | >>> | ||||
| runtime { | runtime { | ||||
| } | } | ||||
| output { | output { | ||||
| File all_txt="output_all.txt" | File all_txt="output_all.txt" | ||||
| File ncm="RiboZero_D5_1.ncm" | |||||
| File loc="wd.txt" | |||||
| File ncm="wd.txt" | |||||
| File cor_txt="output_corr_matrix.txt" | File cor_txt="output_corr_matrix.txt" | ||||
| File matched_txt="output_matched.txt" | File matched_txt="output_matched.txt" | ||||
| File r_script="r_script.r" | File r_script="r_script.r" |
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