LUYAO REN
il y a 6 ans
1 fichiers modifiés avec 2 ajouts et 4 suppressions
+ 2
- 4
tasks/NGScheckMates.wdl
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| @@ -11,8 +11,7 @@ task NGScheckMates { | |||
| nt=$(nproc) | |||
| export NCM_HOME=/opt/NGSCheckMate | |||
| python /opt/NGSCheckMate/ncm_fastq.py -l ${input_file} -pt /opt/NGSCheckMate/SNP/SNP.pt -O '.' -p $nt -f -nz | |||
| pwd > wd.txt | |||
| ls >> wd.txt | |||
| ls /cromwell_inputs/ > wd.txt | |||
| >>> | |||
| runtime { | |||
| @@ -23,8 +22,7 @@ task NGScheckMates { | |||
| } | |||
| output { | |||
| File all_txt="output_all.txt" | |||
| File ncm="RiboZero_D5_1.ncm" | |||
| File loc="wd.txt" | |||
| File ncm="wd.txt" | |||
| File cor_txt="output_corr_matrix.txt" | |||
| File matched_txt="output_matched.txt" | |||
| File r_script="r_script.r" | |||
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