LUYAO REN
6 years ago
1 changed files with 1 additions and 2 deletions
+ 1
- 2
tasks/NGScheckMates.wdl
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| set -e | set -e | ||||
| nt=$(nproc) | nt=$(nproc) | ||||
| export NCM_HOME=/opt/NGSCheckMate | export NCM_HOME=/opt/NGSCheckMate | ||||
| python /opt/NGSCheckMate/ncm_fastq.py -l ${input_file} -pt /opt/NGSCheckMate/SNP/SNP.pt -O '.' -p $nt -f -nz | |||||
| ls /cromwell_inputs/* > wd.txt | |||||
| python /opt/NGSCheckMate/ncm_fastq.py -l ${input_file} -pt /opt/NGSCheckMate/SNP/SNP.pt -O '.' -p $nt -f -nz -s 0.5 | |||||
| >>> | >>> | ||||
| runtime { | runtime { |
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