LUYAO REN
pirms 6 gadiem
1 mainītis faili ar 1 papildinājumiem un 2 dzēšanām
+ 1
- 2
tasks/NGScheckMates.wdl
Parādīt failu
| @@ -10,8 +10,7 @@ task NGScheckMates { | |||
| set -e | |||
| nt=$(nproc) | |||
| export NCM_HOME=/opt/NGSCheckMate | |||
| python /opt/NGSCheckMate/ncm_fastq.py -l ${input_file} -pt /opt/NGSCheckMate/SNP/SNP.pt -O '.' -p $nt -f -nz | |||
| ls /cromwell_inputs/* > wd.txt | |||
| python /opt/NGSCheckMate/ncm_fastq.py -l ${input_file} -pt /opt/NGSCheckMate/SNP/SNP.pt -O '.' -p $nt -f -nz -s 0.5 | |||
| >>> | |||
| runtime { | |||
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