String cluster_config | String cluster_config | ||||
String disk_size | String disk_size | ||||
Boolean amplicon = if (method == "amplicon") then true else false | |||||
command << | command << | ||||
if (${method}=="amplicon"); then | |||||
if ${amplicon}; then | |||||
cp ${bed} access-mappable.bed | cp ${bed} access-mappable.bed | ||||
else | else | ||||
cnvkit.py access -s ${min_gap_size} -o access-mappable.bed ${fasta} | cnvkit.py access -s ${min_gap_size} -o access-mappable.bed ${fasta} |