@@ -8,8 +8,11 @@ task access { | |||
String cluster_config | |||
String disk_size | |||
Boolean amplicon = if (method == "amplicon") then true else false | |||
command << | |||
if (${method}=="amplicon"); then | |||
if ${amplicon}; then | |||
cp ${bed} access-mappable.bed | |||
else | |||
cnvkit.py access -s ${min_gap_size} -o access-mappable.bed ${fasta} |