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Array[File] normal_bai |
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Array[File] normal_bai |
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File bed |
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File bed |
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File fasta |
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File fasta |
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File fai |
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String docker |
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File fai |
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String docker |
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String cluster_config |
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String cluster_config |
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String disk_size |
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String disk_size |
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call access.access as access { |
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input: |
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fasta=fasta, |
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fai=fai, |
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docker = docker, |
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cluster_config = cluster_config, |
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disk_size = disk_size |
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} |
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call access.access as access { |
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input: |
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fasta=fasta, |
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fai=fai, |
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docker = docker, |
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cluster_config = cluster_config, |
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disk_size = disk_size |
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} |
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call batch.batch as batch { |
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input: |
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sample_id = sample_id, |
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fasta=fasta, |
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fai=fai, |
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tumor_bam = tumor_bam, |
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tumor_bai = tumor_bai, |
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normal_bam = normal_bam, |
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normal_bai = normal_bai, |
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bed = bed, |
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access_bed = access.access_bed, |
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docker = docker, |
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cluster_config = cluster_config, |
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disk_size = disk_size |
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} |
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call batch.batch as batch { |
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input: |
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sample_id = sample_id, |
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fasta=fasta, |
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fai=fai, |
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tumor_bam = tumor_bam, |
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tumor_bai = tumor_bai, |
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normal_bam = normal_bam, |
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normal_bai = normal_bai, |
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bed = bed, |
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access_bed = access.access_bed, |
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docker = docker, |
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cluster_config = cluster_config, |
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disk_size = disk_size |
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} |
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call export.export as export { |
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input: |
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result = batch.result, |
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|
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docker = docker, |
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cluster_config = cluster_config, |
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|
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|
|
disk_size = disk_size |
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|
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} |
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|
|
call export.export as export { |
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|
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input: |
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|
|
result = batch.result, |
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|
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|
|
docker = docker, |
|
|
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|
|
cluster_config = cluster_config, |
|
|
|
|
|
disk_size = disk_size |
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|
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|
|
} |
|
|
} |
|
|
} |