YaqingLiu преди 4 години
родител
ревизия
35dfa8192f
променени са 1 файла, в които са добавени 32 реда и са изтрити 32 реда
  1. +32
    -32
      workflow.wdl

+ 32
- 32
workflow.wdl Целия файл

@@ -10,41 +10,41 @@ workflow {{ project_name }} {
Array[File] normal_bai
File bed
File fasta
File fai
String docker
File fai
String docker
String cluster_config
String disk_size

call access.access as access {
input:
fasta=fasta,
fai=fai,
docker = docker,
cluster_config = cluster_config,
disk_size = disk_size
}
call access.access as access {
input:
fasta=fasta,
fai=fai,
docker = docker,
cluster_config = cluster_config,
disk_size = disk_size
}

call batch.batch as batch {
input:
sample_id = sample_id,
fasta=fasta,
fai=fai,
tumor_bam = tumor_bam,
tumor_bai = tumor_bai,
normal_bam = normal_bam,
normal_bai = normal_bai,
bed = bed,
access_bed = access.access_bed,
docker = docker,
cluster_config = cluster_config,
disk_size = disk_size
}
call batch.batch as batch {
input:
sample_id = sample_id,
fasta=fasta,
fai=fai,
tumor_bam = tumor_bam,
tumor_bai = tumor_bai,
normal_bam = normal_bam,
normal_bai = normal_bai,
bed = bed,
access_bed = access.access_bed,
docker = docker,
cluster_config = cluster_config,
disk_size = disk_size
}

call export.export as export {
input:
result = batch.result,
docker = docker,
cluster_config = cluster_config,
disk_size = disk_size
}
call export.export as export {
input:
result = batch.result,
docker = docker,
cluster_config = cluster_config,
disk_size = disk_size
}
}

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