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String disk_size |
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String disk_size |
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command <<< |
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command <<< |
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#mkdir -p /cromwell_root/tmp/cnvkit |
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cp -r ${sep=" " results} . |
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#cd /cromwell_root/tmp/cnvkit |
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# this version app just provides seg |
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cnvkit.py export seg *.cns -o ${sample_id}.seg |
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#mkdir -p /cromwell_root/tmp/cnvkit |
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cp -r ${sep=" " results} . |
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#cd /cromwell_root/tmp/cnvkit |
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# this version app just provides seg |
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cnvkit.py export seg *.cns -o ${sample_id}.seg |
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>>> |
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>>> |
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runtime { |
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runtime { |
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docker: docker |
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cluster: cluster_config |
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systemDisk: "cloud_ssd 40" |
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dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" |
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docker: docker |
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cluster: cluster_config |
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systemDisk: "cloud_ssd 40" |
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dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" |
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} |
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} |
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output { |
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output { |