1 changed files with 9 additions and 9 deletions
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tasks/export.wdl
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| String disk_size | String disk_size | ||||
| command <<< | command <<< | ||||
| #mkdir -p /cromwell_root/tmp/cnvkit | |||||
| cp -r ${sep=" " results} . | |||||
| #cd /cromwell_root/tmp/cnvkit | |||||
| # this version app just provides seg | |||||
| cnvkit.py export seg *.cns -o ${sample_id}.seg | |||||
| #mkdir -p /cromwell_root/tmp/cnvkit | |||||
| cp -r ${sep=" " results} . | |||||
| #cd /cromwell_root/tmp/cnvkit | |||||
| # this version app just provides seg | |||||
| cnvkit.py export seg *.cns -o ${sample_id}.seg | |||||
| >>> | >>> | ||||
| runtime { | runtime { | ||||
| docker: docker | |||||
| cluster: cluster_config | |||||
| systemDisk: "cloud_ssd 40" | |||||
| dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" | |||||
| docker: docker | |||||
| cluster: cluster_config | |||||
| systemDisk: "cloud_ssd 40" | |||||
| dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" | |||||
| } | } | ||||
| output { | output { |
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