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alter format

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YaqingLiu 4 jaren geleden
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1 gewijzigde bestanden met toevoegingen van 9 en 9 verwijderingen
  1. +9
    -9
      tasks/export.wdl

+ 9
- 9
tasks/export.wdl Bestand weergeven

String disk_size String disk_size


command <<< command <<<
#mkdir -p /cromwell_root/tmp/cnvkit
cp -r ${sep=" " results} .
#cd /cromwell_root/tmp/cnvkit
# this version app just provides seg
cnvkit.py export seg *.cns -o ${sample_id}.seg
#mkdir -p /cromwell_root/tmp/cnvkit
cp -r ${sep=" " results} .
#cd /cromwell_root/tmp/cnvkit
# this version app just provides seg
cnvkit.py export seg *.cns -o ${sample_id}.seg
>>> >>>
runtime { runtime {
docker: docker
cluster: cluster_config
systemDisk: "cloud_ssd 40"
dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/"
docker: docker
cluster: cluster_config
systemDisk: "cloud_ssd 40"
dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/"
} }


output { output {

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