@@ -1,5 +1,4 @@ | |||
{ | |||
"{{ project_name }}.sample_id": "{{ sample_id }}", | |||
"{{ project_name }}.vcf": "{{ vcf }}", | |||
"{{ project_name }}.annovar_docker": "{{ annovar_docker }}", | |||
"{{ project_name }}.database": "{{ database }}", |
@@ -2,7 +2,6 @@ import "./tasks/annovar.wdl" as annovar | |||
workflow {{ project_name }} { | |||
String sample_id | |||
File vcf | |||
File database | |||
String annovar_docker | |||
@@ -11,7 +10,6 @@ workflow {{ project_name }} { | |||
call annovar.annovar as indel_loh_annovar { | |||
input: | |||
sample_id=sample_id, | |||
vcf=vcf, | |||
database=database, | |||
docker=annovar_docker, |