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inputs
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| { | { | ||||
| "{{ project_name }}.sample_id": "{{ sample_id }}", | |||||
| "{{ project_name }}.vcf": "{{ vcf }}", | "{{ project_name }}.vcf": "{{ vcf }}", | ||||
| "{{ project_name }}.annovar_docker": "{{ annovar_docker }}", | "{{ project_name }}.annovar_docker": "{{ annovar_docker }}", | ||||
| "{{ project_name }}.database": "{{ database }}", | "{{ project_name }}.database": "{{ database }}", |
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workflow.wdl
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| workflow {{ project_name }} { | workflow {{ project_name }} { | ||||
| String sample_id | |||||
| File vcf | File vcf | ||||
| File database | File database | ||||
| String annovar_docker | String annovar_docker | ||||
| call annovar.annovar as indel_loh_annovar { | call annovar.annovar as indel_loh_annovar { | ||||
| input: | input: | ||||
| sample_id=sample_id, | |||||
| vcf=vcf, | vcf=vcf, | ||||
| database=database, | database=database, | ||||
| docker=annovar_docker, | docker=annovar_docker, |
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