共有 1 个文件被更改，包括 1 次插入 和 1 次删除
+ 1
- 1
tasks/annovar.wdl
查看文件
| @@ -13,7 +13,7 @@ task annovar { | |||
| set -o pipefail | |||
| set -e | |||
| nt=$(nproc) | |||
| table_annovar.pl ${vcf} ${database} -buildver hg38 -hgvs -out ${annotated_vcf} -remove -protocol refGene,cytoBand,genomicSuperDups,ljb26_all,dbnsfp35c,intervar_20180118,cosmic70,exac03,gnomad211_exome,clinvar_20200316 -operation g,r,r,f,f,f,f,f,f,f -nastring . -vcfinput -thread $nt | |||
| /usr/annovar/table_annovar.pl ${vcf} ${database} -buildver hg38 -hgvs -out ${annotated_vcf} -remove -protocol refGene,cytoBand,genomicSuperDups,ljb26_all,dbnsfp35c,intervar_20180118,cosmic70,exac03,gnomad211_exome,clinvar_20200316 -operation g,r,r,f,f,f,f,f,f,f -nastring . -vcfinput -thread $nt | |||
| >>> | |||
| runtime { | |||
正在加载...