test annovar version

defaults

@@ -1,5 +1,5 @@
 {
-  "annovar_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/annovar:v2018.04",
+  "annovar_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/annovar:v2019.10",
   "database": "oss://pgx-reference-data/annovar_hg38/",
   "hg": "hg38",
   "disk_size": "200",

tasks/annovar.wdl

@@ -13,7 +13,7 @@ task annovar {
     set -o pipefail
     set -e
     nt=$(nproc)
-    /installations/annovar/table_annovar.pl ${vcf} ${database} -buildver hg38 -hgvs -out ${annotated_vcf} -remove -protocol refGene,cytoBand,genomicSuperDups,ljb26_all,dbnsfp35c,intervar_20180118,cosmic70,exac03,gnomad211_exome,clinvar_20200316 -operation g,r,r,f,f,f,f,f,f,f -nastring . -vcfinput -thread $nt
+    table_annovar.pl ${vcf} ${database} -buildver hg38 -hgvs -out ${annotated_vcf} -remove -protocol refGene,cytoBand,genomicSuperDups,ljb26_all,dbnsfp35c,intervar_20180118,cosmic70,exac03,gnomad211_exome,clinvar_20200316 -operation g,r,r,f,f,f,f,f,f,f -nastring . -vcfinput -thread $nt
   >>>
   
   runtime {