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@@ -1,6 +1,6 @@ |
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### Variant calling |
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This APP developed for somatic short variant discovery (SNVs + Indels). |
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***Supported callers*** |
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* TNhaplotyper2 |
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* TNscope |
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@@ -14,11 +14,11 @@ Variant caller can be selected by setting `ture/false` in the submitted sample.c |
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The datatype is judged by whether the bed file is set (i.e. the `regions` in inputs). |
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#### New version |
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### New version |
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* The TNhaplotyper, also named as TNseq in `v0.1.0`, has beed substituted by TNhaplotyper2. |
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* The `corealigner` step has been removed. |
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#### How to run this APP |
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### How to run this APP |
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We recommend using choppy system and Aliyun OSS service. The command will look like this: |
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