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This APP developed for somatic short variant discovery (SNVs + Indels). |
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**Supported callers** |
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***Supported callers*** |
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* TNhaplotyper2 |
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* TNscope |
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* VarScan |
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* TNhaplotyper (This caller is only available in `v0.1.0` as it is too outdated) |
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Variant caller can be selected by setting `ture/false` in the submitted sample.csv. |
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**Types of data that can be received** |
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***Accepted data*** |
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* TN matched WES |
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* WGS |
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The datatype is judged by whether the bed file is set (i.e. the `regions` in inputs). |
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#### New version |
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* The TNhaplotyper, also named as TNseq in `v0.1.0`, has beed substituted by TNhaplotyper2. |
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* The `corealigner` step has been removed. |